Easy if you know how 
Consider the following two lines:
#include <set>
#include <vector> // vaCI:skip:misc-include-cleaner - skip the single check "misc-include-cleaner" for this single line
by default both are being flagged by project wide code inspection. The comment disables this single check on this single line.
This is documented here:
https://wholetomato.fogbugz.com/f/page?W760
and you can do quite a few other things, but personally I favour this approach, since it keeps the skipped checks as small and narrow as possible, to make sure you aren't accidentally turning off code inspection across entire functions or files.
